Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECH_1122Conserved hypothetical protein; Identified by similarity to GB:AAK28660.1. (148 aa)    
Predicted Functional Partners:
omp-1Q
Major outer membrane protein OMP-1Q; Identified by similarity to GB:AAK28661.1; match to protein family HMM PF01617.
       0.766
omp-1P
Major outer membrane protein OMP-1P; Identified by similarity to GB:AAK28662.1; match to protein family HMM PF01617.
       0.719
omp-1T
Major outer membrane protein OMP-1T; Identified by similarity to GB:AAK28663.1; match to protein family HMM PF01617.
       0.692
omp-1U
Major outer membrane protein OMP-1U; Identified by similarity to GB:AAK28664.1; match to protein family HMM PF01617.
       0.656
omp-1V
Major outer membrane protein OMP-1V; Identified by similarity to GB:AAK28665.1; match to protein family HMM PF01617.
       0.601
ECH_1128
Conserved hypothetical protein; Identified by similarity to GB:AAK28666.1.
       0.548
omp-1w
Major outer membrane protein OMP-1W; Identified by similarity to GB:AAK28667.1; match to protein family HMM PF01617.
       0.548
omp-1X
Major outer membrane protein OMP-1X; Identified by similarity to GB:AAK28668.1; match to protein family HMM PF01617.
       0.544
omp-1Y
Major outer membrane protein OMP-1Y; Identified by similarity to GB:AAK28669.1; match to protein family HMM PF01617.
       0.537
omp-1N
Major outer membrane protein Omp-1N; Identified by similarity to GB:AAK28659.1; match to protein family HMM PF01617.
       0.517
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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