STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
omp-1VMajor outer membrane protein OMP-1V; Identified by similarity to GB:AAK28665.1; match to protein family HMM PF01617. (279 aa)    
Predicted Functional Partners:
omp-1U
Major outer membrane protein OMP-1U; Identified by similarity to GB:AAK28664.1; match to protein family HMM PF01617.
      
0.778
ECH_1128
Conserved hypothetical protein; Identified by similarity to GB:AAK28666.1.
       0.777
omp-1w
Major outer membrane protein OMP-1W; Identified by similarity to GB:AAK28667.1; match to protein family HMM PF01617.
      
0.777
omp-1Y
Major outer membrane protein OMP-1Y; Identified by similarity to GB:AAK28669.1; match to protein family HMM PF01617.
      
0.765
omp-1T
Major outer membrane protein OMP-1T; Identified by similarity to GB:AAK28663.1; match to protein family HMM PF01617.
      
0.748
omp-1P
Major outer membrane protein OMP-1P; Identified by similarity to GB:AAK28662.1; match to protein family HMM PF01617.
      
0.727
omp-1X
Major outer membrane protein OMP-1X; Identified by similarity to GB:AAK28668.1; match to protein family HMM PF01617.
      
0.696
omp-1Q
Major outer membrane protein OMP-1Q; Identified by similarity to GB:AAK28661.1; match to protein family HMM PF01617.
      
0.694
omp-1S
Major outer membrane protein OMP-1S; Identified by similarity to GB:AAK28670.1; match to protein family HMM PF01617.
      
0.692
miaB
tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.640
Your Current Organism:
Ehrlichia chaffeensis
NCBI taxonomy Id: 205920
Other names: E. chaffeensis str. Arkansas, Ehrlichia chaffeensis Arkansas, Ehrlichia chaffeensis str. Arkansas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.