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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIQ61855.1Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)    
Predicted Functional Partners:
KIQ66204.1
Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.848
KIQ61854.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.781
KIQ67303.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.756
KIQ61853.1
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.738
arcA
Arginine deiminase; Catalyzes the degradation of arginine to citruline and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.665
KIQ65189.1
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.649
KIQ64967.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
KIQ65239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
KIQ67305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.553
KIQ66934.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.533
Your Current Organism:
Kitasatospora griseola
NCBI taxonomy Id: 2064
Other names: DSM 43859, IFO 14371, JCM 3339, K. griseola, Kitasatospora sp. OM-5023, NBRC 14371, NRRL B-16229, Streptomyces griseolisporeus, Streptomyces griseolosporeus, VKM Ac-2002, strain AM-9660
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