STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsU30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. (70 aa)    
Predicted Functional Partners:
AKF25742.1
30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.985
AKF24428.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.984
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.984
AKF25555.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.984
rpmB
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.983
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.983
AKF25551.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.982
AKF24291.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.980
AKF25205.1
50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.980
AKF25507.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.980
Your Current Organism:
Sulfurovum lithotrophicum
NCBI taxonomy Id: 206403
Other names: ATCC BAA-797, JCM 12117, S. lithotrophicum, Sulfurovum lithotrophicum Inagaki et al. 2004, epsilon proteobacterium 42BKT, strain 42BKT
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