STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF24290.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
AKF24291.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.958
AKF24289.1
Nucleoside diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.912
AKF25782.1
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.900
AKF24292.1
Phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.864
AKF24167.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.819
AKF25892.1
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.793
AKF25552.1
tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.785
AKF25553.1
Ribosome maturation factor RimM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.785
AKF25555.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.785
AKF25507.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.784
Your Current Organism:
Sulfurovum lithotrophicum
NCBI taxonomy Id: 206403
Other names: ATCC BAA-797, JCM 12117, S. lithotrophicum, Sulfurovum lithotrophicum Inagaki et al. 2004, epsilon proteobacterium 42BKT, strain 42BKT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.