STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF24553.1FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
AKF25208.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.589
AKF24237.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.550
AKF24550.1
Formyltetrahydrofolate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.550
AKF25201.1
tRNA modification GTPase TrmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.544
AKF25681.1
Glucose-inhibited division protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.532
AKF25417.1
Thiamine-phosphate diphosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.514
AKF24460.1
tRNA 2-selenouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.507
AKF24521.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.495
trmL
RNA methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
     
 0.490
Your Current Organism:
Sulfurovum lithotrophicum
NCBI taxonomy Id: 206403
Other names: ATCC BAA-797, JCM 12117, S. lithotrophicum, Sulfurovum lithotrophicum Inagaki et al. 2004, epsilon proteobacterium 42BKT, strain 42BKT
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.