STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF25556.1Signal recognition particle; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
AKF25348.1
Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.995
AKF25795.1
Preprotein translocase subunit SecY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.970
AKF24165.1
Preprotein translocase subunit SecE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.956
AKF24004.1
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.951
AKF25203.1
Insertase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.939
AKF25793.1
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.937
AKF25794.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.937
AKF25551.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.935
AKF25786.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.935
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.930
Your Current Organism:
Sulfurovum lithotrophicum
NCBI taxonomy Id: 206403
Other names: ATCC BAA-797, JCM 12117, S. lithotrophicum, Sulfurovum lithotrophicum Inagaki et al. 2004, epsilon proteobacterium 42BKT, strain 42BKT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.