Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKO70719.1 | KKO71085.1 | AAV32_14500 | AAV32_12470 | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.437 |
KKO70719.1 | KKO72629.1 | AAV32_14500 | AAV32_06330 | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family. | 0.686 |
KKO70719.1 | KKO73405.1 | AAV32_14500 | AAV32_00585 | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.543 |
KKO70719.1 | orn | AAV32_14500 | AAV32_14495 | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.633 |
KKO70719.1 | rsgA | AAV32_14500 | AAV32_14505 | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.834 |
KKO71085.1 | KKO70719.1 | AAV32_12470 | AAV32_14500 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.437 |
KKO71085.1 | KKO73405.1 | AAV32_12470 | AAV32_00585 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.677 |
KKO72629.1 | KKO70719.1 | AAV32_06330 | AAV32_14500 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family. | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.686 |
KKO73405.1 | KKO70719.1 | AAV32_00585 | AAV32_14500 | Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.543 |
KKO73405.1 | KKO71085.1 | AAV32_00585 | AAV32_12470 | Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.677 |
orn | KKO70719.1 | AAV32_14495 | AAV32_14500 | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.633 |
orn | rsgA | AAV32_14495 | AAV32_14505 | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.690 |
rsgA | KKO70719.1 | AAV32_14505 | AAV32_14500 | GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.834 |
rsgA | orn | AAV32_14505 | AAV32_14495 | GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.690 |