STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN24276.1Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains. (398 aa)    
Predicted Functional Partners:
SDN31373.1
PAS domain S-box-containing protein.
  
 0.969
SDN96124.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.961
SDN24200.1
PAS domain S-box-containing protein.
 
  0.960
SDN24242.1
HD-like signal output (HDOD) domain, no enzymatic activity.
 
0.933
SDN87681.1
PAS domain S-box-containing protein.
 
 0.933
SDN40562.1
PAS domain S-box-containing protein.
 
 0.929
SDN70628.1
PAS domain S-box-containing protein.
  
0.923
SDN50155.1
Adenylate cyclase.
 
  0.909
SDN80398.1
Stage II sporulation protein E (SpoIIE).
 
  0.837
SDN69657.1
Signal transduction histidine kinase.
 0.800
Your Current Organism:
Desulfonauticus submarinus
NCBI taxonomy Id: 206665
Other names: CIP 107713, D. submarinus, DSM 15269, Desulfonauticus submarinus Audiffrin et al. 2003, strain 6N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.