STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cscBSucrose transport protein; Sucrose permease; CscB; COG family: permeases of the major facilitator superfamily; PFAM_ID: LacY_symp. (500 aa)    
Predicted Functional Partners:
cscA
Beta-fructofuranosidase (sucrase/invertase); CscA; COG family: beta-fructosidases (levanase/invertase); PFAM_ID: Glyco_hydro_32; Belongs to the glycosyl hydrolase 32 family.
 
   
 0.964
BL0107
COG family: transcriptional regulators; PFAM_ID: lacI; PFAM_ID: Peripla_BP_like.
     
 0.885
BL0109
Hypothetical protein.
     
 0.715
BL0108
Hypothetical protein with similarity to serine protease inhibitors; Belongs to the serpin family.
     
 0.640
BL0104
Possible permease protein of ABC transporter system; COG family: ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease components.
       0.542
BL0374
Hypothetical protein with similarity to putative terminase gp4 of mycobacteriophage TM4.
  
     0.466
BL0187
exo-alpha-L-arabinofuranosidase II; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.447
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.