STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL0174Narrowly conserved hypothetical protein; COG family: uncharacterized Bcr. (742 aa)    
Predicted Functional Partners:
BL0175
Probable AraC/XylS-type transcriptional regulator; COG family: AraC-type DNA-binding domain-containing proteins; PFAM_ID: HTH_AraC.
 
     0.832
pepC1
PepC; COG family: aminopeptidase C; PFAM_ID: Pept_C1-like; Belongs to the peptidase C1 family.
       0.475
BL0059
Narrowly conserved hypothetical protein.
 
     0.445
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.