STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL0209COG family: lps biosynthesis protein. (357 aa)    
Predicted Functional Partners:
BL0210
Probable glycerol-3-phosphate cytidylyltransferase; CDP-glycerol pyrophosphorylase; teichoic acid biosynthesis protein; COG family: cytidylyltransferase; PFAM_ID: Cytidylyltransf.
 
     0.832
rgpDc
Protein possibly involved in ATP-driven polysaccharide export; RgpDC; COG family: ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM_ID: ABC_tran.
 
     0.502
BL0208
Possible permease protein of ABC transporter system for export of polysaccharide; COG family: membrane permeases involved in cell wall biosynthesis; PFAM_ID: ABC2_membrane.
       0.436
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.