STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL0814Hypothetical protein. (107 aa)    
Predicted Functional Partners:
BL1271
COG family: transcriptional regulator; PFAM_ID: tetR.
  
     0.634
BL0813
Hypothetical protein.
 
     0.571
BL1270
Hypothetical transmembrane protein possibly involved in uptake or efflux; COG family: permeases of the major facilitator superfamily.
  
     0.570
BL1626
Possible class I pyridine nucleotide-disulfideoxidoreductase; COG family: dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes; PFAM_ID: pyr_redox; PFAM_ID: pyr_redox_dim.
  
     0.522
BL1627
Hypothetical protein in upf0074; COG family: predicted transcriptional regulator; PFAM_ID: UPF0074.
  
    0.504
BL0815
Hypothetical protein.
       0.425
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.