STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL1489Hypothetical protein with limited similarity to PrgB aggregation substance; COG family: cation transport ATPases. (1603 aa)    
Predicted Functional Partners:
BL1010
Hypothetical protein with FtsK/SpoIIIE domain; COG family: DNA segregation ATPase FtsK/SpoIIIE and related proteins; PFAM_ID: FtsK_SpoIIIE.
   
 
 0.578
ftsK
Cell division protein FtsK; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Required for activation of the Xer recombinase, allowing activation of chromosome unlinking by recombination (By similarity). Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.578
BL1761
Probable beta-1,3-exoglucanase; COG family: endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
   0.547
BL1436
Hypothetical protein.
  
 
 0.507
BL1490
Hypothetical protein.
       0.466
BL0004
Hypothetical protein.
  
 
 0.460
BL1488
Hypothetical protein.
       0.456
pepO
Belongs to peptidase family M13; Zinc metalloprotease; PepO; COG family: predicted metalloendopeptidase; PFAM_ID: Peptidase_M13.
  
    0.422
BL1492
Hypothetical protein with similarity to the Par protein of Bifidobacterium breve plasmid pcibb1; COG family: ATPases involved in chromosome partitioning; PFAM_ID: ParA.
  
   0.414
parA
ParA; COG family: ATPases involved in chromosome partitioning; PFAM_ID: fer4_NifH; PFAM_ID: ParA.
   
   0.405
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.