STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serCProbable phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (380 aa)    
Predicted Functional Partners:
serA
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 0.971
serB
Probable phosphoserine phosphatase; Psp; O-phosphoserine phosphohydrolase; Pspase; SerB; COG family: phosphoserine phosphatase; PFAM_ID: Hydrolase.
 
 
 0.941
thrC
ThrC; COG family: threonine synthase; PFAM_ID: PALP.
   
 0.937
BL1659
Hypothetical protein.
       0.687
BL1568
Possible 2-hydroxyacid dehydrogenase; COG family: phosphoglycerate dehydrogenase and related dehydrogenases; PFAM_ID: 2-Hacid_DH_C; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.684
BL0038
Conserved protein with hydroxyacid dehydrogenase catalytic domain; COG family: phosphoglycerate dehydrogenase and related dehydrogenases; PFAM_ID: 2-Hacid_DH_C.
  
 
 0.671
glyA
GlyA; COG family: glycine hydroxymethyltransferase; PFAM_ID: SHMT; PFAM_ID: SHMT.
  
 
 0.671
hisC
Histidinol-phosphate aminotransferase; Imidazole acetol-phosphate transaminase; HisC; COG family: histidinol-phosphate aminotransferase/tyrosine aminotransferase; PFAM_ID: aminotran_1_2; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
  
 0.642
fas
Fas; COG family: 3-oxoacyl-(acyl-carrier-protein) synthase; PFAM_ID: MaoC_dehydratas; PFAM_ID: Acyl_transf; PFAM_ID: ketoacyl-synt; PFAM_ID: ketoacyl-synt_C.
   
 
 0.637
BL0722
Narrowly conserved hypothetical protein.
  
   
 0.600
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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