STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL1677ATP-binding protein of ABC transporter system; COG family: ABC-type multidrug transport system, ATPase component; PFAM_ID: ABC_tran. (318 aa)    
Predicted Functional Partners:
BL1678
Hypothetical transmembrane protein with unknown function.
 
  
 0.951
msiK
ATP binding protein of ABC transporter for sugars; MsiK; COG family: ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component; PFAM_ID: ABC_tran; Belongs to the ABC transporter superfamily.
 
    
0.896
BL1718
ATP binding protein of ABC transporter for branched-chain amino acids; COG family: ABC-type branched-chain amino acid transport systems, ATPase component; PFAM_ID: ABC_tran.
 
     
0.833
BL1679
Hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3 (S13) domain; COG family: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); PFAM_ID: Peptidase_S13.
       0.808
BL1676
Narrowly conserved hypothetical transmembrane protein; COG family: glycosyltransferases, probably involved in cell wall biogenesis; PFAM_ID: Glycos_transf_2.
  
 
 0.744
BL1675
Hypothetical integral membrane protein in upfo118; COG family: predicted permease; PFAM_ID: UPF0118.
  
  
 0.720
ftsH
ATP-dependent zinc metallopeptidase involved in cell division; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 
 0.713
BL1135
COG family: ABC-type transport systems, involved in lipoprotein release, ATPase components; PFAM_ID: ABC_tran.
  
0.688
hprT
HgpRT; HprT; COG family: hypoxanthine-guanine phosphoribosyltransferase; PFAM_ID: Pribosyltran; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.684
tilS
Narrowly conserved hypothetical protein similar to MesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.683
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.