STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulokinase; XylB; COG family: sugar (pentulose and hexulose) kinases; PFAM_ID: FGGY; PFAM_ID: FGGY_C. (506 aa)    
Predicted Functional Partners:
xylA
XylA; COG family: xylose isomerase; PFAM_ID: Xylose_isom; Belongs to the xylose isomerase family.
 
 
 0.990
araD
AraD; COG family: ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; PFAM_ID: Aldolase_II.
 
 
 0.960
BL1293
Similar to xylulose kinase; Xylulokinase; XylB; COG family: sugar (pentulose and hexulose) kinases; PFAM_ID: FGGY; PFAM_ID: FGGY_C; Belongs to the FGGY kinase family.
 
  
 
0.938
rpe
Pentose-5-phosphate 3-epimerase; Ppe; Rpe; COG family: pentose-5-phosphate-3-epimerase; PFAM_ID: Ribul_P_3_epim; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.923
BL1710
Possible XylR-type repressor; COG family: transcriptional regulators; PFAM_ID: ROK.
 
  
 0.858
galK
Galactokinase; Galactose kinase; GalK; COG family: galactokinase; PFAM_ID: GHMP_kinases.
  
  
 0.708
tkt
Transketolase; Tkt; COG family: transketolase; PFAM_ID: transketolase; PFAM_ID: transket_pyr; PFAM_ID: transketolase_C; Belongs to the transketolase family.
  
 
 0.671
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.624
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.507
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.494
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.