CJF30_00002972 protein (Rutstroemia sp. NJR2017a BBW)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CJF30_00002972

E3 ubiquitin protein ligase. (726 aa)

Predicted Functional Partners:

CJF30_00001420

0.996

CJF30_00000636

0.986

CJF30_00007143

0.913

CJF30_00003987

0.879

CJF30_00003305

0.878

CJF30_00000842

0.848

CJF30_00000471

0.835

CJF30_00000604

0.832

CJF30_00006597

0.823

CJF30_00010254

0.792

Your Current Organism:

Rutstroemia sp. NJR2017a BBW

NCBI taxonomy Id: 2070414
Other names: R. sp. NJR-2017a BBW, Rutstroemia sp. NJR-2017a BBW, Rutstroemia sp. NJR-2017a_BBW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CJF30_00000471	CJF30_00000604	A0A2S7QGU8	A0A2S7QH76	Formin binding protein.	Beta-lactamase-type transpeptidase fold domain containing protein.	0.650
CJF30_00000471	CJF30_00000636	A0A2S7QGU8	A0A2S7QH75	Formin binding protein.	Uncharacterized protein.	0.957
CJF30_00000471	CJF30_00000842	A0A2S7QGU8	A0A2S7QHU7	Formin binding protein.	Uncharacterized protein.	0.699
CJF30_00000471	CJF30_00001420	A0A2S7QGU8	A0A2S7Q0P9	Formin binding protein.	Ubiquitin-conjugating enzyme E2 2 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.677
CJF30_00000471	CJF30_00002972	A0A2S7QGU8	A0A2S7PFM8	Formin binding protein.	E3 ubiquitin protein ligase.	0.835
CJF30_00000471	CJF30_00003305	A0A2S7QGU8	A0A2S7PQN7	Formin binding protein.	Uncharacterized protein.	0.662
CJF30_00000471	CJF30_00003987	A0A2S7QGU8	A0A2S7QR13	Formin binding protein.	CDC73_C domain-containing protein.	0.653
CJF30_00000471	CJF30_00010254	A0A2S7QGU8	A0A2S7QNR2	Formin binding protein.	Ubiquitin conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.489
CJF30_00000604	CJF30_00000471	A0A2S7QH76	A0A2S7QGU8	Beta-lactamase-type transpeptidase fold domain containing protein.	Formin binding protein.	0.650
CJF30_00000604	CJF30_00000636	A0A2S7QH76	A0A2S7QH75	Beta-lactamase-type transpeptidase fold domain containing protein.	Uncharacterized protein.	0.999
CJF30_00000604	CJF30_00000842	A0A2S7QH76	A0A2S7QHU7	Beta-lactamase-type transpeptidase fold domain containing protein.	Uncharacterized protein.	0.978
CJF30_00000604	CJF30_00001420	A0A2S7QH76	A0A2S7Q0P9	Beta-lactamase-type transpeptidase fold domain containing protein.	Ubiquitin-conjugating enzyme E2 2 protein; Belongs to the ubiquitin-conjugating enzyme family.	0.741
CJF30_00000604	CJF30_00002972	A0A2S7QH76	A0A2S7PFM8	Beta-lactamase-type transpeptidase fold domain containing protein.	E3 ubiquitin protein ligase.	0.832
CJF30_00000604	CJF30_00003987	A0A2S7QH76	A0A2S7QR13	Beta-lactamase-type transpeptidase fold domain containing protein.	CDC73_C domain-containing protein.	0.976
CJF30_00000604	CJF30_00006597	A0A2S7QH76	A0A2S7NPC8	Beta-lactamase-type transpeptidase fold domain containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.457
CJF30_00000604	CJF30_00007143	A0A2S7QH76	A0A2S7PJR0	Beta-lactamase-type transpeptidase fold domain containing protein.	Histone H2B; Belongs to the histone H2B family.	0.911
CJF30_00000604	CJF30_00010254	A0A2S7QH76	A0A2S7QNR2	Beta-lactamase-type transpeptidase fold domain containing protein.	Ubiquitin conjugating enzyme protein; Belongs to the ubiquitin-conjugating enzyme family.	0.454
CJF30_00000636	CJF30_00000471	A0A2S7QH75	A0A2S7QGU8	Uncharacterized protein.	Formin binding protein.	0.957
CJF30_00000636	CJF30_00000604	A0A2S7QH75	A0A2S7QH76	Uncharacterized protein.	Beta-lactamase-type transpeptidase fold domain containing protein.	0.999
CJF30_00000636	CJF30_00000842	A0A2S7QH75	A0A2S7QHU7	Uncharacterized protein.	Uncharacterized protein.	0.999