STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJF30_00000509PHD-finger domain-containing protein. (877 aa)    
Predicted Functional Partners:
CJF30_00001672
Transcription initiation factor TFIID subunit 1 protein.
    
 0.999
CJF30_00010999
TAF domain-containing protein.
    
 0.999
CJF30_00003855
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.999
CJF30_00009350
Putative transcription initiation factor TFIID subunit 5 protein.
   
 0.998
CJF30_00001511
Uncharacterized protein.
    
 0.998
CJF30_00000647
TATA-box binding protein.
    
 0.998
CJF30_00001292
TFIID_20kDa domain-containing protein.
    
 0.998
CJF30_00002367
Transcription initiation factor TFIID subunit 7 protein.
    
 0.997
CJF30_00001951
Acyltransferase family protein.
   
 0.997
CJF30_00010996
Transcription initiation factor TFIID subunit 11 protein.
   
 0.997
Your Current Organism:
Rutstroemia sp. NJR2017a BBW
NCBI taxonomy Id: 2070414
Other names: R. sp. NJR-2017a BBW, Rutstroemia sp. NJR-2017a BBW, Rutstroemia sp. NJR-2017a_BBW
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