STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ONH84452.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
ONH84453.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
ONH84454.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ONH84870.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.631
ONH84456.1
acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.
  
   0.484
fadD_2
acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.482
ONH84455.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.469
ONH83295.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.460
ONH84458.1
DUF296 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.455
ONH84459.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.455
ONH84845.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.450
Your Current Organism:
Roseomonas mucosa
NCBI taxonomy Id: 207340
Other names: ATCC BAA-692, ATCC:BAA:692, CCUG 48654, LMG 22453, LMG:22453, NCTC 13291, R. mucosa, Roseomonas mucosa Han et al. 2003 emend. Sanchez-Porro et al. 2009, Roseomonas sp. MDA5527, strain MDA5527
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