STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vjbR_1HTH-type quorum sensing-dependent transcriptional regulator VjbR. (288 aa)    
Predicted Functional Partners:
pdhS
Cell-division control histidine kinase PdhS.
  
 
 0.795
uhpA
Transcriptional regulatory protein UhpA.
 
 
 0.603
nylA_1
6-aminohexanoate-cyclic-dimer hydrolase; Belongs to the amidase family.
       0.578
OSY44057.1
Anaerobic benzoate catabolism transcriptional regulator.
  
 
 0.531
degS_2
Signal transduction histidine-protein kinase/phosphatase DegS.
 
 
 0.509
acsA_2
Acetyl-coenzyme A synthetase.
     
 0.502
devS_1
Redox sensor histidine kinase response regulator DevS.
 
 
 0.500
OSY37699.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.491
yhjE_1
Inner membrane metabolite transport protein YhjE.
       0.487
desK_7
Sensor histidine kinase DesK.
 
 
 0.480
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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