STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY44025.1Hypothetical protein. (340 aa)    
Predicted Functional Partners:
nrtA
Nitrate transport protein NrtA precursor.
 
    0.951
cmpB
Bicarbonate transport system permease protein CmpB.
 
    0.931
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA.
 
    0.842
OSY44024.1
Hypothetical protein.
       0.827
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.708
etfA
Electron transfer flavoprotein subunit alpha.
  
 
 0.578
paaZ_3
Bifunctional protein PaaZ.
  
 0.548
kstR2_2
HTH-type transcriptional repressor KstR2.
 
     0.536
OSY44029.1
Hypothetical protein.
       0.528
etfB_1
Electron transfer flavoprotein subunit beta.
  
 
 0.527
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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