Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
degS_1 | degU_1 | BG845_01984 | BG845_00151 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein DegU. | 0.795 |
degS_4 | degU_1 | BG845_06088 | BG845_00151 | Signal transduction histidine-protein kinase/phosphatase DegS. | Transcriptional regulatory protein DegU. | 0.829 |
degU_1 | degS_1 | BG845_00151 | BG845_01984 | Transcriptional regulatory protein DegU. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.795 |
degU_1 | degS_4 | BG845_00151 | BG845_06088 | Transcriptional regulatory protein DegU. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.829 |
degU_1 | desK_4 | BG845_00151 | BG845_03127 | Transcriptional regulatory protein DegU. | Sensor histidine kinase DesK. | 0.775 |
degU_1 | desK_6 | BG845_00151 | BG845_03872 | Transcriptional regulatory protein DegU. | Sensor histidine kinase DesK. | 0.778 |
degU_1 | desK_7 | BG845_00151 | BG845_06021 | Transcriptional regulatory protein DegU. | Sensor histidine kinase DesK. | 0.795 |
degU_1 | liaS_13 | BG845_00151 | BG845_06657 | Transcriptional regulatory protein DegU. | Sensor histidine kinase LiaS. | 0.764 |
degU_1 | liaS_3 | BG845_00151 | BG845_00150 | Transcriptional regulatory protein DegU. | Sensor histidine kinase LiaS. | 0.946 |
degU_1 | liaS_6 | BG845_00151 | BG845_02512 | Transcriptional regulatory protein DegU. | Sensor histidine kinase LiaS. | 0.839 |
degU_1 | nreB_3 | BG845_00151 | BG845_03304 | Transcriptional regulatory protein DegU. | Oxygen sensor histidine kinase NreB. | 0.833 |
degU_1 | pdhS | BG845_00151 | BG845_06114 | Transcriptional regulatory protein DegU. | Cell-division control histidine kinase PdhS. | 0.795 |
desK_4 | degU_1 | BG845_03127 | BG845_00151 | Sensor histidine kinase DesK. | Transcriptional regulatory protein DegU. | 0.775 |
desK_6 | degU_1 | BG845_03872 | BG845_00151 | Sensor histidine kinase DesK. | Transcriptional regulatory protein DegU. | 0.778 |
desK_6 | desK_7 | BG845_03872 | BG845_06021 | Sensor histidine kinase DesK. | Sensor histidine kinase DesK. | 0.779 |
desK_7 | degU_1 | BG845_06021 | BG845_00151 | Sensor histidine kinase DesK. | Transcriptional regulatory protein DegU. | 0.795 |
desK_7 | desK_6 | BG845_06021 | BG845_03872 | Sensor histidine kinase DesK. | Sensor histidine kinase DesK. | 0.779 |
desK_7 | pdhS | BG845_06021 | BG845_06114 | Sensor histidine kinase DesK. | Cell-division control histidine kinase PdhS. | 0.432 |
liaS_13 | degU_1 | BG845_06657 | BG845_00151 | Sensor histidine kinase LiaS. | Transcriptional regulatory protein DegU. | 0.764 |
liaS_3 | degU_1 | BG845_00150 | BG845_00151 | Sensor histidine kinase LiaS. | Transcriptional regulatory protein DegU. | 0.946 |
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