STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irtA_1Iron import ATP-binding/permease protein IrtA. (619 aa)    
Predicted Functional Partners:
potA_1
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
    
0.905
irtB_1
Iron import ATP-binding/permease protein IrtB.
 
    
0.826
gsiA_8
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
     
0.804
OSY44045.1
Siderophore-interacting FAD-binding domain protein.
  
    0.794
OSY44046.1
Siderophore-interacting protein.
  
    0.794
yfiY_1
Putative siderophore-binding lipoprotein YfiY precursor.
     
 0.775
mbtB
Phenyloxazoline synthase MbtB.
 
  
 0.715
OSY40835.1
Saccharopine dehydrogenase.
 
 
 
 0.697
yheI_3
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
 
    
0.681
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
   
 0.673
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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