STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbE_1Thiol:disulfide interchange protein DsbE. (199 aa)    
Predicted Functional Partners:
CcdA
Cytochrome C biogenesis protein transmembrane region.
 
  
 0.872
pspA_1
Phosphoserine phosphatase 1.
  
    0.800
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.790
OSY34418.1
Cytochrome C biogenesis protein transmembrane region.
 
  
 0.734
OSY44187.1
Hypothetical protein.
       0.723
ccsB_1
Cytochrome c biogenesis protein CcsB.
  
  
 0.657
ccsA_1
Cytochrome c biogenesis protein CcsA.
  
  
 0.631
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
     
 0.585
cycY
Thiol:disulfide interchange protein CycY precursor.
 
  
 0.566
OSY36635.1
Cytochrome C biogenesis protein transmembrane region.
 
  
 0.485
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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