STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_3Long-chain-fatty-acid--CoA ligase. (549 aa)    
Predicted Functional Partners:
echA8_4
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.831
mmgC_1
Acyl-CoA dehydrogenase.
  
  
 0.712
FadE7
Acyl-CoA dehydrogenase, short-chain specific.
 
  
 0.712
OSY44203.1
Aminoglycoside/hydroxyurea antibiotic resistance kinase.
       0.709
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.691
menB_1
1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
     
 0.681
lcfB_16
Long-chain-fatty-acid--CoA ligase.
 
0.664
acrC_2
Acryloyl-CoA reductase (NADH).
  
  
 0.637
acsA_4
Acetyl-coenzyme A synthetase.
 
 
0.557
bclA_2
Benzoate--CoA ligase.
 
 
0.553
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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