Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HolA | OSY43102.1 | BG845_03238 | BG845_00707 | Hypothetical protein. | Hypothetical protein. | 0.709 |
HolA | nucS | BG845_03238 | BG845_00451 | Hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.725 |
HolA | rbpA_1 | BG845_03238 | BG845_02062 | Hypothetical protein. | RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.748 |
HolA | whiB1_1 | BG845_03238 | BG845_02635 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.636 |
HolA | whiB1_2 | BG845_03238 | BG845_05704 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.580 |
HolA | whiB1_3 | BG845_03238 | BG845_05910 | Hypothetical protein. | Transcriptional regulator WhiB1. | 0.573 |
HolA | whiB1_4 | BG845_03238 | BG845_06379 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.539 |
HolA | whiB_1 | BG845_03238 | BG845_04603 | Hypothetical protein. | Transcriptional regulator WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.586 |
OSY43102.1 | HolA | BG845_00707 | BG845_03238 | Hypothetical protein. | Hypothetical protein. | 0.709 |
OSY43102.1 | nucS | BG845_00707 | BG845_00451 | Hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.756 |
OSY43102.1 | rbpA_1 | BG845_00707 | BG845_02062 | Hypothetical protein. | RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.779 |
OSY43102.1 | whiB1_1 | BG845_00707 | BG845_02635 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.774 |
OSY43102.1 | whiB1_2 | BG845_00707 | BG845_05704 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.772 |
OSY43102.1 | whiB1_3 | BG845_00707 | BG845_05910 | Hypothetical protein. | Transcriptional regulator WhiB1. | 0.774 |
OSY43102.1 | whiB1_4 | BG845_00707 | BG845_06379 | Hypothetical protein. | Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.774 |
OSY43102.1 | whiB_1 | BG845_00707 | BG845_04603 | Hypothetical protein. | Transcriptional regulator WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.862 |
OSY43456.1 | OSY43511.1 | BG845_00399 | BG845_00454 | Hypothetical protein. | Hypothetical protein. | 0.730 |
OSY43456.1 | nucS | BG845_00399 | BG845_00451 | Hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.730 |
OSY43511.1 | OSY43456.1 | BG845_00454 | BG845_00399 | Hypothetical protein. | Hypothetical protein. | 0.730 |
OSY43511.1 | nucS | BG845_00454 | BG845_00451 | Hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.840 |
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