STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglAN, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase. (398 aa)    
Predicted Functional Partners:
wzc
Tyrosine-protein kinase wzc.
 
  
 0.950
OSY43654.1
Hypothetical protein.
  
  
 0.907
OSY43655.1
Polysaccharide biosynthesis protein.
  
  
 0.856
epsL
Putative sugar transferase EpsL.
 
     0.835
mshA_4
D-inositol 3-phosphate glycosyltransferase.
 
  
 0.768
OSY36873.1
Hypothetical protein.
  
  
 0.728
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
  
 0.720
mshA_2
D-inositol 3-phosphate glycosyltransferase.
 
  
 0.703
OSY35171.1
UDP-glucose 4-epimerase.
 
  
 0.651
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.649
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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