STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tycATyrocidine synthase 1; Belongs to the ATP-dependent AMP-binding enzyme family. (532 aa)    
Predicted Functional Partners:
arnA
Bifunctional polymyxin resistance protein ArnA.
 
 
 0.969
OSY42818.1
Putative fatty-acid--CoA ligase fadD21.
 
     0.969
OSY42814.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 0.964
OSY37732.1
Putative ligase/MSMEI_5285.
 
     0.935
OSY36678.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
 0.926
budC_3
Diacetyl reductase [(S)-acetoin forming].
 
 
 0.911
HemL_1
Beta-phenylalanine transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.906
sdh_1
Serine 3-dehydrogenase.
 
  
 0.906
OSY36925.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.906
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.897
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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