STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galMAldose 1-epimerase. (305 aa)    
Predicted Functional Partners:
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.986
ppgK
Polyphosphate glucokinase.
  
 
 0.911
glkA_2
Glucokinase.
  
 
 0.911
glkA_3
Glucokinase.
  
 
 0.911
galT
Galactose-1-phosphate uridylyltransferase.
  
 
 0.769
yhaO
Putative metallophosphoesterase YhaO.
       0.699
recF_1
DNA replication and repair protein RecF.
       0.694
rutE
Putative malonic semialdehyde reductase RutE.
  
  
 0.637
clcD_2
Carboxymethylenebutenolidase.
  
   
 0.585
dacC
D-alanyl-D-alanine carboxypeptidase DacC precursor.
  
    0.546
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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