Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DinG | OSY35989.1 | BG845_03834 | BG845_05670 | Hypothetical protein. | Hypothetical protein. | 0.637 |
DinG | polA_1 | BG845_03834 | BG845_01773 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.929 |
DinG | polA_2 | BG845_03834 | BG845_02040 | Hypothetical protein. | DNA polymerase I. | 0.841 |
DinG | recA | BG845_03834 | BG845_02239 | Hypothetical protein. | DNA recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.724 |
DinG | recQ_1 | BG845_03834 | BG845_00719 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.598 |
DinG | recQ_2 | BG845_03834 | BG845_03293 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.630 |
DinG | topA | BG845_03834 | BG845_03406 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.750 |
DinG | uvrD2 | BG845_03834 | BG845_01442 | Hypothetical protein. | ATP-dependent DNA helicase UvrD2. | 0.829 |
DinG | yhaO | BG845_03834 | BG845_00788 | Hypothetical protein. | Putative metallophosphoesterase YhaO. | 0.895 |
OSY35989.1 | DinG | BG845_05670 | BG845_03834 | Hypothetical protein. | Hypothetical protein. | 0.637 |
OSY35989.1 | polA_1 | BG845_05670 | BG845_01773 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.979 |
OSY35989.1 | polA_2 | BG845_05670 | BG845_02040 | Hypothetical protein. | DNA polymerase I. | 0.782 |
OSY35989.1 | recA | BG845_05670 | BG845_02239 | Hypothetical protein. | DNA recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.803 |
OSY35989.1 | recQ_1 | BG845_05670 | BG845_00719 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.805 |
OSY35989.1 | recQ_2 | BG845_05670 | BG845_03293 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.818 |
OSY35989.1 | topA | BG845_05670 | BG845_03406 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.869 |
OSY35989.1 | uvrD2 | BG845_05670 | BG845_01442 | Hypothetical protein. | ATP-dependent DNA helicase UvrD2. | 0.952 |
OSY35989.1 | yhaO | BG845_05670 | BG845_00788 | Hypothetical protein. | Putative metallophosphoesterase YhaO. | 0.998 |
polA_1 | DinG | BG845_01773 | BG845_03834 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Hypothetical protein. | 0.929 |
polA_1 | OSY35989.1 | BG845_01773 | BG845_05670 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Hypothetical protein. | 0.979 |
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