STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virSHTH-type transcriptional regulator VirS. (336 aa)    
Predicted Functional Partners:
sadH_1
Putative oxidoreductase SadH; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.687
ethA_1
FAD-containing monooxygenase EthA.
 
   
 0.656
mhpC_1
2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase.
       0.529
cdhR_1
HTH-type transcriptional regulator CdhR.
 
 
 0.490
sadH_2
Putative oxidoreductase SadH; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.427
cdhR_3
HTH-type transcriptional regulator CdhR.
  
 
 0.424
OSY41777.1
Putative HTH-type transcriptional regulator/MT2039; Belongs to the LysR transcriptional regulatory family.
  
  
 0.400
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.