STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY43271.1Hypothetical protein. (294 aa)    
Predicted Functional Partners:
OSY42368.1
Hypothetical protein.
 
     0.711
OSY42194.1
Hypothetical protein.
 
     0.689
gltB_2
Glutamate synthase [NADPH] large chain.
  
    0.544
gltA_4
Glutamate synthase [NADPH] large chain.
  
    0.544
OSY37767.1
Hypothetical protein.
  
     0.519
iclR_1
Acetate operon repressor.
       0.499
OSY38555.1
Excalibur calcium-binding domain protein.
  
     0.428
OSY43971.1
Hypothetical protein.
 
     0.413
OSY37471.1
Hypothetical protein.
 
     0.400
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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