STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yngG_1Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family. (307 aa)    
Predicted Functional Partners:
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.934
scoB
Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.934
menB_3
1,4-Dihydroxy-2-naphthoyl-CoA synthase.
  
 0.930
acsA_6
Acetyl-coenzyme A synthetase.
 
 0.929
acs_1
Acetyl-coenzyme A synthetase.
 
 0.929
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.929
acsA_3
Acetyl-coenzyme A synthetase.
 
 0.928
fadA_3
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.923
yngG_3
Hydroxymethylglutaryl-CoA lyase YngG.
  
  
 
0.923
fadA_5
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.923
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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