STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY42812.1Hypothetical protein. (634 aa)    
Predicted Functional Partners:
OSY42814.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
   
 0.948
pdhC_2
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
 
     0.941
fabH1
3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1.
 
     0.914
ppsA_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
 
   
 0.907
lgrE_1
Linear gramicidin dehydrogenase LgrE.
 
     0.854
OSY42818.1
Putative fatty-acid--CoA ligase fadD21.
   
 0.804
OSY42811.1
Hypothetical protein.
       0.794
OSY42808.1
2,6-dihydropseudooxynicotine hydrolase.
       0.790
OSY42809.1
Holo-(acyl carrier protein) synthase 2; Belongs to the P-Pant transferase superfamily.
       0.790
acdA_2
Acyl-CoA dehydrogenase; Overlaps another CDS with the same product name.
     
 0.722
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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