STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbsG_4(R)-benzylsuccinyl-CoA dehydrogenase. (431 aa)    
Predicted Functional Partners:
OSY43930.1
Phosphotransferase enzyme family protein.
 
 0.980
OSY36143.1
Putative aminoglycoside phosphotransferase.
 
 0.980
OSY37083.1
Putative aminoglycoside phosphotransferase.
 
 0.978
OSY39838.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
 
 0.923
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.897
OSY34576.1
Putative aminoglycoside phosphotransferase.
 
 0.881
echA8_4
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.849
echA8_1
Putative enoyl-CoA hydratase echA8.
  
 0.827
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.827
fcbB2
4-chlorobenzoyl coenzyme A dehalogenase-2.
  
 0.827
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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