STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY42844.1RNA pyrophosphohydrolase. (160 aa)    
Predicted Functional Partners:
OSY42843.1
Hypothetical protein.
       0.773
aacA4
Aminoglycoside N(6')-acetyltransferase type 1.
       0.773
ymdB
O-acetyl-ADP-ribose deacetylase.
       0.741
OSY42842.1
5-formyltetrahydrofolate cyclo-ligase family protein.
       0.741
dapH_1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
       0.736
OSY42840.1
Hypothetical protein.
       0.736
lig
Putative DNA ligase-like protein; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
     0.523
OSY42846.1
SNARE associated Golgi protein.
       0.476
OSY41574.1
Putative DNA ligase-like protein/MT0965.
 
     0.419
ykoU_2
Putative ATP-dependent DNA ligase YkoU.
  
     0.412
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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