STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgR_3Transcriptional regulator KdgR. (248 aa)    
Predicted Functional Partners:
yhdG_2
Putative amino acid permease YhdG.
 
     0.803
kdgR_4
Transcriptional regulator KdgR.
  
     0.764
kipR_3
HTH-type transcriptional regulator KipR.
  
     0.763
pcaR_2
Pca regulon regulatory protein.
  
     0.762
kdgR_6
Pectin degradation repressor protein KdgR.
  
     0.761
kdgR_7
Transcriptional regulator KdgR.
  
     0.761
kdgR_8
Transcriptional regulator KdgR.
  
     0.761
kipR_5
HTH-type transcriptional regulator KipR.
  
     0.761
kdgR_2
Transcriptional regulator KdgR.
  
     0.760
kdgR_9
Transcriptional regulator KdgR.
  
     0.760
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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