STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaO_22,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor. (346 aa)    
Predicted Functional Partners:
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
  
 0.995
yiaM_2
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  
 0.968
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
  
 0.928
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
  
 0.902
yiaM_1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  
 0.874
yiaM_3
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  
 0.867
OSY38560.1
Hypothetical protein.
   
 
 0.728
kipR_2
HTH-type transcriptional regulator KipR.
 
   
 0.714
OSY36956.1
Hypothetical protein.
 
     0.477
OSY39206.1
ABC transporter, phosphonate, periplasmic substrate-binding protein.
  
   
 0.470
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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