STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_1Putative ABC transporter ATP-binding protein YxlF. (338 aa)    
Predicted Functional Partners:
OSY42402.1
ABC-2 family transporter protein.
  
 
 0.896
OSY39089.1
ABC-2 family transporter protein.
 
 
 0.880
tauB_2
Taurine import ATP-binding protein TauB.
    
0.872
bioM
Biotin transport ATP-binding protein BioM.
  
0.775
OSY38257.1
ABC-2 family transporter protein.
 
 
 0.762
OSY39087.1
Hypothetical protein.
 
     0.725
OSY37409.1
Putative ABC transporter ATP-binding protein.
 
 0.710
yheI_3
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
 
 0.680
potA_4
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    
0.617
yheI_2
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
 
 0.609
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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