STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (542 aa)    
Predicted Functional Partners:
garA
Glycogen accumulation regulator GarA.
 
 
 
 0.905
pstP_1
PP2C-family Ser/Thr phosphatase.
 
 0.878
pstP_2
PP2C-family Ser/Thr phosphatase.
 
 0.877
spk1
Serine/threonine-protein kinase PK-1.
 
 
0.664
pknB_1
Serine/threonine-protein kinase PknB.
 
 
0.661
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.588
fhaA
FHA domain-containing protein FhaA.
 
 
 
 0.577
pknK
Serine/threonine-protein kinase PknK.
      0.515
OSY42036.1
Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).
       0.488
OSY42034.1
Carboxylesterase BioH.
       0.456
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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