STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eccCa1_1ESX-1 secretion system protein EccCa1. (743 aa)    
Predicted Functional Partners:
OSY42183.1
Hypothetical protein.
 
   
 0.839
OSY41035.1
Proteins of 100 residues with WXG; Belongs to the WXG100 family.
  
 
 0.836
OSY42182.1
Hypothetical protein.
 
     0.812
OSY41020.1
Hypothetical protein.
  
 
 0.811
OSY42180.1
Hypothetical protein.
       0.779
OSY42179.1
Hypothetical protein.
       0.690
OSY42178.1
Hypothetical protein.
       0.686
OSY35280.1
Hypothetical protein.
 
     0.659
OSY38702.1
Acetyltransferase (GNAT) family protein.
 
     0.652
OSY36018.1
Hypothetical protein.
 
     0.652
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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