STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patAPutative N-acetyl-LL-diaminopimelate aminotransferase. (384 aa)    
Predicted Functional Partners:
lrp_2
Leucine-responsive regulatory protein.
 
   
 0.949
pheA
Prephenate dehydratase.
  
 0.675
OSY43297.1
Universal stress protein/MT2061.
  
  
 0.617
OSY43315.1
Universal stress protein/MT2061.
  
  
 0.617
OSY42747.1
Universal stress protein/MT2061.
  
  
 0.617
OSY39072.1
Universal stress protein/MT1672.
  
  
 0.617
OSY38484.1
Universal stress protein.
  
  
 0.617
OSY38276.1
Universal stress protein/MT2698.
  
  
 0.617
OSY35530.1
Universal stress protein.
  
  
 0.617
OSY35269.1
Universal stress protein/MSMEI_3859.
  
  
 0.617
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.