STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfmC_2Fe(3+)-citrate-binding protein YfmC precursor. (351 aa)    
Predicted Functional Partners:
yusV_5
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.880
yusV_1
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.875
yusV_4
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.875
yusV_7
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.875
yusV_3
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.874
yusV_6
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.873
yusV_2
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.777
yfiZ_3
Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.763
yfmC_6
Fe(3+)-citrate-binding protein YfmC precursor.
  
     0.761
yfiZ_1
Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.677
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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