STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugC_1Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (415 aa)    
Predicted Functional Partners:
sugA_1
Trehalose transport system permease protein SugA.
 
 
 0.990
sugB_1
Trehalose transport system permease protein SugB.
 
 0.982
sugB_2
Trehalose transport system permease protein SugB.
 0.977
sugA_2
Trehalose transport system permease protein SugA.
 
 0.974
lpqY
Trehalose-binding lipoprotein LpqY precursor.
 
 
 0.973
ycjP_2
Inner membrane ABC transporter permease protein YcjP.
 
 
 0.938
OSY41237.1
Putative ABC transporter-binding protein precursor.
  
 0.930
yteP
Putative multiple-sugar transport system permease YteP.
 
 
 0.910
ugpA_1
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 
 0.910
lacF
Lactose transport system permease protein LacF.
 
 
 0.910
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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