Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSY41817.1 | bepR | BG845_01846 | BG845_01847 | Hypothetical protein. | HTH-type transcriptional repressor BepR. | 0.581 |
bepR | OSY41817.1 | BG845_01847 | BG845_01846 | HTH-type transcriptional repressor BepR. | Hypothetical protein. | 0.581 |
bepR | icaR | BG845_01847 | BG845_03518 | HTH-type transcriptional repressor BepR. | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | 0.552 |
bepR | kstR2_11 | BG845_01847 | BG845_02900 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2. | 0.590 |
bepR | kstR2_15 | BG845_01847 | BG845_04166 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2; Overlaps another CDS with the same product name. | 0.557 |
bepR | kstR2_22 | BG845_01847 | BG845_06467 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2. | 0.543 |
bepR | kstR2_5 | BG845_01847 | BG845_00950 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2. | 0.571 |
bepR | kstR2_7 | BG845_01847 | BG845_00966 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2. | 0.592 |
bepR | kstR2_8 | BG845_01847 | BG845_01075 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional repressor KstR2. | 0.506 |
bepR | penM | BG845_01847 | BG845_01848 | HTH-type transcriptional repressor BepR. | Pentalenolactone synthase; Belongs to the cytochrome P450 family. | 0.494 |
bepR | rutR_1 | BG845_01847 | BG845_00331 | HTH-type transcriptional repressor BepR. | HTH-type transcriptional regulator RutR. | 0.524 |
icaR | bepR | BG845_03518 | BG845_01847 | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | HTH-type transcriptional repressor BepR. | 0.552 |
icaR | kstR2_11 | BG845_03518 | BG845_02900 | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | HTH-type transcriptional repressor KstR2. | 0.569 |
icaR | kstR2_5 | BG845_03518 | BG845_00950 | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | HTH-type transcriptional repressor KstR2. | 0.408 |
icaR | kstR2_7 | BG845_03518 | BG845_00966 | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | HTH-type transcriptional repressor KstR2. | 0.620 |
kstR2_11 | bepR | BG845_02900 | BG845_01847 | HTH-type transcriptional repressor KstR2. | HTH-type transcriptional repressor BepR. | 0.590 |
kstR2_11 | icaR | BG845_02900 | BG845_03518 | HTH-type transcriptional repressor KstR2. | Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR. | 0.569 |
kstR2_11 | rutR_1 | BG845_02900 | BG845_00331 | HTH-type transcriptional repressor KstR2. | HTH-type transcriptional regulator RutR. | 0.743 |
kstR2_15 | bepR | BG845_04166 | BG845_01847 | HTH-type transcriptional repressor KstR2; Overlaps another CDS with the same product name. | HTH-type transcriptional repressor BepR. | 0.557 |
kstR2_22 | bepR | BG845_06467 | BG845_01847 | HTH-type transcriptional repressor KstR2. | HTH-type transcriptional repressor BepR. | 0.543 |
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