STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciC_1Putative metal chaperone YciC. (389 aa)    
Predicted Functional Partners:
ddc_1
L-2,4-diaminobutyrate decarboxylase.
       0.752
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.581
yheI_1
Putative multidrug resistance ABC transporter ATP-binding/permease protein YheI.
       0.578
OSY41843.1
Putative ABC transporter ATP-binding protein.
       0.578
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.575
OSY41839.1
MFS-type drug efflux transporter P55.
       0.552
dksA
RNA polymerase-binding transcription factor DksA.
  
  
 0.552
fimA
Manganese ABC transporter substrate-binding lipoprotein precursor.
  
  
 0.514
SitA
Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.514
OSY34558.1
Periplasmic solute binding protein family protein.
  
  
 0.514
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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