STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echA8_6Putative enoyl-CoA hydratase echA8. (258 aa)    
Predicted Functional Partners:
frc_1
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
  
 
 0.789
echA6_3
Putative enoyl-CoA hydratase echA6.
 
   
 0.782
paaF_7
2,3-dehydroadipyl-CoA hydratase.
  
     0.715
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.666
fadB2_1
3-hydroxybutyryl-CoA dehydrogenase.
 
 0.662
adhD_1
Putative alcohol dehydrogenase D.
  
  
 0.646
lcfB_16
Long-chain-fatty-acid--CoA ligase.
  
 0.637
OSY41848.1
Tripartite tricarboxylate transporter family receptor.
       0.631
OSY41849.1
Tripartite tricarboxylate transporter TctB family protein.
       0.631
OSY41850.1
Tripartite tricarboxylate transporter TctA family protein.
       0.631
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.