STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSY41855.1Transcriptional regulator BetI. (210 aa)    
Predicted Functional Partners:
mmgC_10
Acyl-CoA dehydrogenase.
       0.774
fabG_10
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.769
fadA_3
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.666
OSY40952.1
Hypothetical protein.
  
     0.562
kstR2_10
HTH-type transcriptional repressor KstR2.
  
    0.491
OSY39468.1
Hypothetical protein.
  
   
 0.490
limB_9
Limonene 1,2-monooxygenase.
  
     0.472
OSY41859.1
Hypothetical protein.
       0.460
pucR_2
Purine catabolism regulatory protein.
  
    0.442
OSY38226.1
Methylenetetrahydromethanopterin reductase.
  
     0.439
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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