STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rebG4'-demethylrebeccamycin synthase. (334 aa)    
Predicted Functional Partners:
sigJ_2
ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
       0.520
mbtB
Phenyloxazoline synthase MbtB.
 
   
 0.498
lcfB_16
Long-chain-fatty-acid--CoA ligase.
  
  
 0.480
tycC_1
Tyrocidine synthase 3.
 
  
 0.477
OSY42814.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
  
 0.434
eryF_1
6-deoxyerythronolide B hydroxylase; Belongs to the cytochrome P450 family.
  
 
 0.402
OSY43336.1
Cytochrome P450 107B1.
  
 
 0.402
OSY42799.1
Putative cytochrome P450 120.
  
 
 0.402
OSY42804.1
Cytochrome P450 107B1.
  
 
 0.402
OSY42914.1
Cytochrome P450-SU2.
  
 
 0.402
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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